Protein Synthesis-Eukaryotes- Introduction:
The mechanism of translation in higher system is more or less same as that of prokaryotes, but with certain distinct differences.� Initiation factors involved are more and diverse. The process is more complex and elaborate. The synthesis starts in free cytoplasm, but later depending upon the N-terminal signal sequences the mRNA-ribosome complex moves to ER.� The other mRNAs are translated in cytoplasm and synthesis of some are localized in cytoplasm.� Synthesis is regulated at different levels, though the steps like chain initiation, chain elongation and chain termination are more or less similar.� The factors involved are more and the process is complex.� Protein synthesis is regulated at different levels, for the number and kinds of cell types, vary in position and function.
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Translation Factors Required:
Chain Initiation Factors:
Factor |
Mol.wt (KD) |
Function (s) |
eIF-1 |
15
|
15kd, monomer; it is a pleotropic factor or multifunctional factor acts at many steps in initiation, it assists in mRNA binding, and activates chain initiation by 20%. |
eIF1A(eIF4C) |
17 |
Helps in met-i.tRNA and mRNA binding to 40s |
eIF-2A-abc |
125 (130) (Trimer: alpha(36),beta(50), gamma(55)
|
Activated eIF2A (GTP) binds to met-i.tRNA, Helps in initiator tRNA complex binding to 40s ribosome.� It is similar to prokaryotic IF-2 in function.
|
eIF-2B (GEF) |
a-26, b-39, y-58, d67, e-82=270 |
Binds to GTP, acts as GEF (GTP Exchange Factor)-[eIf2A-GDP-GEF-eIF2A-GTP] |
eIF2 |
94 |
Stabilize ternary complex |
eIF-3 |
550-737kd (8-10) subunits� |
Similar to PKs IF-3 in function, it is an anti-dimer factor, itself binds to 40s and prevents 60s subunit association (an anti-association factor), but activates 40 ribosome, stimulate mRNA binding to 40s Ribosome-like eIF6
|
eIF3A helicase (eiF6) |
46 |
Ribosome dissociation |
eIF4F |
|
IF4A.4E,4G1/G3 4E interacts with its partner prots-4EBP1,4EBP2,4EBP3. |
|
|
|
eIF4A |
44-46 |
Binds mRNA at 5� end, �helicase has DEAD box sequence, scans 5�UTR to remove sec. structures |
eIF4-B |
65-80kd |
Monomer; assists 4-A in binding to mRNA and unwinding secondary structures in 5� UTR in ATP dependent manner.� It has an RNA binding domain.� It stimulates 4A�s helicase activity, but on its own it has no helicase activity.
|
|
|
|
eIF4-D (eIF5B) |
112 |
Monomer, supposed to stimulate the whole complex of 80S formation?
|
eIF4-E(α) |
25-26 kd |
Monomer, this factor actually binds to 5� end Cap structure.� Phosphorylation of this factor actually stimulates chain initiation; a rate-limiting step.� Stimulation of cell division with insulin or mitogen is due to 4E subunit�s phosphorylation.�� It actually consists of 4-E-BP-1 and 4-E-BP-2
|
E4E-BP |
4E binding protein |
E-B respond to signals, when non p-lated binds to 4E and represses initiation, when 4EBP p-lated dissociates form 4E and activates initiation, |
|
|
|
eIF4-F |
complex |
�It is cap binding complex, made up of 4-A (50kd), 4-E (24) and 4-G (220kd)
|
|
|
|
eIF- G |
220kd 122� 1� 220kDa,
m7G, |
Multimer, has multifarious functions, in capped mRNAs; it interacts with eIF4-E, eIF-3, eIF4-A, PABI and helps in recruiting 40s subunit.� In cap-less mRNA it interacts with eIF3, eIF4-A and another protein called X.� In capless and poly-A containing RNA, it interacts with PAB-I, eIF3 and eIF-4A.� It loads ribosomes onto mRNA.� Even cap containing mRNAs interacts with eIF4E, eIF3, eIF-4A and PAB-I and loads the ribosomes.� It has stabilizing effect on 4-E too.�� It participates in all the initiating activities by serving as an adopter protein that can interact with a variety of proteins.� Translation of mRNA is greatly stimulated by the presence of poly-A tail binding PAB-1 and eIF-G.� They facilitate in recruiting ribosomes |
Mnk1 and Mnk2 |
Called PHAS, Bp1 and BP2 |
4E kinases |
eIF-5 |
45-48kd |
It stimulates the association of 40s with 60s to form an initiation complex.� It facilitates the release of IF-3 and IF-2 from 40, which helps in 60 s joining the 40s. ribose dependent GTPase
|
eIF5B |
112 |
Subunit joining |
eIF-6 |
23-25kd |
Binds to 60s and prevents 40 binding to 60s (an anti-dimerization factor)- like eIF3
|
|
|
|
PABp |
72 |
Binds to poly-A tail, which in turn binds to eIFG |
Chain elongation Factors:
Factor |
Mol.wt (KD) |
Functions |
eEF-1A- alpha(a |
46-51 |
Equivalent to EF-Tu of bacteria, it is major factor, found abundantly; its activity is regulated, activated by GTP, then binds to a.a-tRNAs, no bias, |
eEF1B,(b, g, d) |
30,36,48 |
It is equivalent to EF-Ts of bacteria; factor is like GEF |
eEF-2 |
92-93kd |
It is like EF-G of bacteria-GTP binding factor, translocation factor, |
Chain termination factors:
Factor |
Mol.wt (KD) |
Functions |
eRF1 |
48-50 |
Chain termination |
eRF3 |
683aa (75kd) |
Ribosome recycling factor |
eEF-G |
ATP bound |
Assist eRF? |
eRRF/ eABCE |
|
Chain termination/RRF |